NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1000344

Scaffold Ga0209401_1000344


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1000344 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32011
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (74.51%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Associated Families13

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F006891Metagenome362Y
F007747Metagenome / Metatranscriptome345Y
F007911Metagenome / Metatranscriptome342N
F009066Metagenome323Y
F015449Metagenome / Metatranscriptome254Y
F016963Metagenome243N
F020510Metagenome / Metatranscriptome223Y
F031026Metagenome183N
F033352Metagenome / Metatranscriptome177N
F041639Metagenome159N
F043284Metagenome156N
F044969Metagenome153N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10003441F041639N/AMGRRPNTAILAQAAATGVGLRQARRQLEKGQAAATAKPIKPIAGIGLDGEIDRLESLAATLGEAAKEASGPERSSLIGDYTRVVEALRKMKGDRPDINEAEGKMVPIDEADKILARRTNALIPLLLGMPKRLAPICAHRPAAEIQKEVENEVGQVMRQVQAAL
Ga0209401_100034414F007911AGGAGMPAVTMLDRLIEAAFKELLSVTVTGPTYHLSHDKTENMPPSIVIKATLGTEEPVQGSGVFSVPVEIVVDDSYDDTTVDAHTQKCSKVLQAFYDSSPLATRLNATTAIGTARCYNAKLESVEPEADDEERTMRRTYKLAVIAYPNSVAS
Ga0209401_100034416F015449GAGMVDSFWGTTNIKVAAAASAFGAKLRQMDPVTCIIKEDTGQRQFTFWFTISGGEEAKAEMERTWADMKSDEESPIRYVRAALENRETLLGLMKRAEPIISIQRGGQTLLVSQRASPELKRALLKKL
Ga0209401_100034418F044969GGAGMSASLTVNPAKLQKALNAFVGSTKLEAAKEMRIQARMLCVSLANSTQPFGLNARAKALGEKAVTTDIDRVYKSGPTAVREIASLPLPRGKTKTQNAKQAAAALAALMLGKTFGKGKKAAQTHGKARELLGRINHKPYIYTEIGDFDRGAKHASARYGKSKRVPKNQYVRQVVTKESDLAKYFKEKRGNVGIAKSGWAVCAGILGGFKGIPKWVYRHTGGGRVQDRSHTKAGVFSKPYISMTNTIPWISNVISKSTVQRSIDIQVIKMIKRLSIIANYERKKAGL
Ga0209401_100034427F006891GAGMSTDQVAELSERLSEVRISVARIETRQSVILDLLERSQASLGEYHGRLTNMEREAHTIKTKLWLLALVSGAVVSTAWELIKRRFSL
Ga0209401_100034429F031026GGAMPGGRIALLLISALALCSCATTQTQDGPPPSQDSISYFIYAWDKAERANKPCPQAYRDLYAQALKALSDSLAETERERARNQ
Ga0209401_100034431F009066GGAGMMSPEHEKHLQGILADLVRDVSAKYRKGQDEHGGALWRRPVWKDAWDEILDLCTYVHTLKMQLSVIGDLALRGASDETVAAAQSRESCRQILAVLEGFPSAEDKQ
Ga0209401_100034440F033352N/AMTDLTKFRLIENIEVMACRNSAERVVKALNRGEIDQAKQLARKHEIAWHMADREFQDLKPTHTNNDFCDDE
Ga0209401_100034443F016963GGAGGVIEVLPEQSTHEQLLNRVRSLARELAEAKAALVAAEGRENDLIDRIRAGL
Ga0209401_100034444F005502AGGMRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTKLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEISK
Ga0209401_100034446F020510AGGCGGVSLADLLAMFSARIIGTYTPEQYAEQVIIARNNRMRWGMGQW
Ga0209401_100034448F007747GGAGGMKDLGKITFGKLRLAPKQVLVDVSYDAKTAKALHAFGLKQLKKDEEAVIQYVIAKALERFSKK
Ga0209401_100034451F043284AGGMKLLSVINKLNETRDKAIELVGRTISLASDAGEIIAVARTEGKDVQAICEEAGITEEVGKRYEKVAATQKRLTSGDADPSLMRQTYLRIGILPDPITMSEPTEPKHFLFPIMKARQWLASRGAKFIAQDKTLREQFLAEAEPIVKAYNDLRGAA
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