NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1001570

Scaffold Ga0209401_1001570


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1001570 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15053
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001981Metagenome / Metatranscriptome608N
F005845Metagenome / Metatranscriptome388Y
F006503Metagenome / Metatranscriptome371N
F008024Metagenome / Metatranscriptome340N
F010395Metagenome / Metatranscriptome304N

Sequences

Protein IDFamilyRBSSequence
Ga0209401_10015701F008024N/AMKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISIVREMSAKSVLNRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCRDGGLFGFFPKKYDGAAHAERAELMKKH
Ga0209401_100157012F005845N/AMKTTPTDFRRWQMHIRKECVNCNRPDKSETIKAWSVNWTLLGRILQAKNA
Ga0209401_100157019F001981N/AMNYPTLITIPKSDICKAEIAQIAQQLTDRINDGEVYPVEAHIKLKAIVKALEATIKATEQAVTAAAYTHGKAFSAFGAEITIKEGSLTPNYDEDPIYADIKAQLKAREELLKIAFRQAGKTVIFDESTGEQVPVCTAKATKASIAVSFK
Ga0209401_100157024F010395N/AMHEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKSCELLGYDPAMAQWAGTKEVHLSSGPDVADPVKVSYFHALNPEE
Ga0209401_10015709F006503GGAMTTDQFVIAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAESNQNTVTIPLSNAPANPEQ
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