Basic Information | |
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Taxon OID | 3300027971 Open in IMG/M |
Scaffold ID | Ga0209401_1001570 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 15053 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 7 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001981 | Metagenome / Metatranscriptome | 608 | N |
F005845 | Metagenome / Metatranscriptome | 388 | Y |
F006503 | Metagenome / Metatranscriptome | 371 | N |
F008024 | Metagenome / Metatranscriptome | 340 | N |
F010395 | Metagenome / Metatranscriptome | 304 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209401_10015701 | F008024 | N/A | MKLQDLTIDQFQRIGAIEFSSVLGDYDKRAGVVAIVEGVDISIVREMSAKSVLNRYKAIISEWNALPALGYKRKFKAGGKWWIPTVFTDELTAGQLIELMDANTTDEKQLLQNLHRIMATLCRDGGLFGFFPKKYDGAAHAERAELMKKH |
Ga0209401_100157012 | F005845 | N/A | MKTTPTDFRRWQMHIRKECVNCNRPDKSETIKAWSVNWTLLGRILQAKNA |
Ga0209401_100157019 | F001981 | N/A | MNYPTLITIPKSDICKAEIAQIAQQLTDRINDGEVYPVEAHIKLKAIVKALEATIKATEQAVTAAAYTHGKAFSAFGAEITIKEGSLTPNYDEDPIYADIKAQLKAREELLKIAFRQAGKTVIFDESTGEQVPVCTAKATKASIAVSFK |
Ga0209401_100157024 | F010395 | N/A | MHEYHSLRPAKALTNALERLMIAIDNADLEGNHALLLEYRKSCELLGYDPAMAQWAGTKEVHLSSGPDVADPVKVSYFHALNPEE |
Ga0209401_10015709 | F006503 | GGA | MTTDQFVIAQKHRKYWDQYIASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFAESNQNTVTIPLSNAPANPEQ |
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