NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209401_1004270

Scaffold Ga0209401_1004270


Overview

Basic Information
Taxon OID3300027971 Open in IMG/M
Scaffold IDGa0209401_1004270 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8894
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)7
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y
F001097Metagenome / Metatranscriptome780Y
F002487Metagenome / Metatranscriptome554Y
F003265Metagenome / Metatranscriptome496Y

Sequences

Protein IDFamilyRBSSequence
Ga0209401_100427013F002487GGAGMIKLVTREDAIKDLSHGEYCCYCCEPKTSGSCCYENHFVPFADLYEEDKEAMIEEYLKDN
Ga0209401_100427019F001097GAGGMNFHWPTNDTTRIRTLQGLRSQRVAQTLPSQEVDEWLKESVKLVAGCVRGLGANQRRVRYFGFETTHEQDSK
Ga0209401_10042702F003265AGTAGGVKWLILLFLFFVFWVSAKAPCTVSDFYALSWLGNPSERHQRLSEWLTTNGDNCSSEQLVGVWNNLAAWAGTADSAELRQKVLYYYAKAVEREKK
Ga0209401_10042706F000166N/AMSNIPTTEDAQYFAQCVKKWQEVLNLGDWRLEKGLKPAKQAMASVEFNEAARLAVYRLGDFGAEKITHQSLDCTALHELLHVMLHDLLTAAQDPKSSQDDIDKQEHRVINLLERLLKDINGRT
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