NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000041

Scaffold Ga0209298_10000041


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000041 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)72493
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (75.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002515Metagenome / Metatranscriptome552Y
F003965Metagenome / Metatranscriptome459Y
F021109Metagenome220Y
F024319Metagenome / Metatranscriptome206Y
F044495Metagenome / Metatranscriptome154Y
F051126Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100000415F044495AGGAMNKFEKALVALAVAGTVGFVFAFAALKGIPEAFDWEDDDEESMWGHDLGGEA
Ga0209298_1000004174F021109AGGMDTLNRIKAEQDLARHEAHEKAMLKSPWIRESVEAYRSADEAQIATIEAIRKKWYGF
Ga0209298_1000004175F003965AGGTGGMTTLTVCKEHNPMLSAISSVGDDQFTFCQDCENNIERWYDDTDPERLPMWSDWKVSK
Ga0209298_1000004178F024319AGGMTNRMWESRNDFQNESDAKRLGYVACSAGCGRVTAWSLCVMCGGNYATHNLVGK
Ga0209298_1000004182F051126AGGCGGMSALTYTIDNLLVGKHYRSRSRHDEGTILHAEKREGIWYGENLDAYVVEVSSTCGIRNFWATVTVRTGE
Ga0209298_1000004187F002515N/AMKKNAEELRRLMELRRSNAASAVPNKKKYDRKKCQSLMLELRKERGPHD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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