Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10000639 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10000639 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23288
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (23.53%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

23288

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (23.53%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Taxonomy

All Organisms → Viruses

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F010620	Metagenome	301	Y
F010918	Metagenome / Metatranscriptome	297	Y
F013186	Metagenome / Metatranscriptome	273	N
F019139	Metagenome / Metatranscriptome	231	Y
F072337	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000063910	F010918	GGA	MKRYKVTYNYFESGKKRIAIRILEALDRDHAIMIMAMWPKLILKVEQYEKI
Ga0209298_1000063911	F072337	AGTAG	MKKYRVWIDDRMEPEGGFWWYCYLGKDGKMHDYIYTDEQADTPQWYIDNGYKVEEL
Ga0209298_1000063922	F013186	N/A	MKKLLDNYISRAYPEVRAYTAYFLSKMGSYIDADTVINNSYIHVLTINDYTADEDKVKGYLLNTIKYQILWSTSKSHKDDRVTAIIDNTPDRMEDDELADKIREDRTYSFNKGLIEIYRSEIVDQVQRIVFEAYIDKGYITSRALATYFGITHTSAYYLIKELKQNLNKLQYRYETESVY
Ga0209298_1000063924	F019139	N/A	MKTKNEHLGKYITMYNGNFETSFTVTEETAKDHKYYTSKGLGYLFEESTPKVKYKGVDNEEKKEKDAEA
Ga0209298_100006393	F010620	GAG	MKYILPIVALCLLGSCSDAKKAQYHYKKAVKFGLSIANDTIKINTIDSFAVIRNDTLIYEKFITTKDTVIQILEMPKTRYQTRIEYRYKTKVLKQDVLKYKYIYKEAKEQRKEVQLTKAKTNWLLFFIGFGCGIALFFILRLLDKLYNPFK
Ga0209298_1000063932	F001883	GGA	MGRYANTGEFNVLYPTRRRMATILKRILKNDIVDGEGTLVESIRINAKITGFEKLEIQIIAMYYFIFLNNGAFLWNGGVITPRDYVAQFTAELNSAGITAEIYAQYTEWLTKKFPILDVVEVLEKNQRIVYTFEALDPPAGFTPGFPLDV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10000639

Overview

Ecosystem & Geography

Associated Families

Sequences