NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10000749

Scaffold Ga0209298_10000749


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10000749 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21742
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (68.42%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009887Metagenome311Y
F011143Metagenome / Metatranscriptome294Y
F020143Metagenome225N
F024787Metagenome204N
F036148Metagenome170N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000074912F011143AGAAGGMHKIEIVKKDGKKITYDLTPSAKVAFEAEFKTGWRKRLGELQMESDLWWFAWRLEKDAGKTDLAFSDEYINQYLDIDLLYDSKNG
Ga0209298_1000074914F020143AGGMLAPDRSLKAIYVENLDAVMDKMKKMDADLQKEFRKELNKAVKPVAKLAKSFVPHSPFPGWRDVEPTYPPAWGWANDTVHRGRTFGDAKQSRWKWSQSEVVAGIKLSSAKTKVQRVKGTTFSVTALAIVNKSVPGIIYELAGFGTSKSRSRTRRVSRNRNASESFIGKLQGTANSGAYKEKRLIYRASYQLGEQVNANLYGVLKKYLGENFRG
Ga0209298_1000074926F036148N/AMATKKPRKAPQRRRRAPRKAEALNKLENHYITLNELFKAAKAAGFSHDVAFWLITEPGASMPDWINPGSQPTEIIPRIDPTEDEDED
Ga0209298_1000074932F024787AGGAMNSEIYGWLVTITLFTLVALLIGVTWIVAVESGYNKGFKAGYKRGTVDTKQTNVKVEKFTVRTHPSMRQKMLEADNEYLMEKVVNLWDRENK
Ga0209298_1000074934F009887GGAGMGDMEMIDANGIKATFTENGVELDIVPLSECCEVCNDPRMLNINGVRKCAGCGCINHIDYKNDQI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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