NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10001706

Scaffold Ga0209298_10001706


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10001706 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14166
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (83.72%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F008496Metagenome / Metatranscriptome332Y
F016662Metagenome / Metatranscriptome245Y
F027180Metagenome / Metatranscriptome195Y
F043404Metagenome156Y
F093864Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000170612F007525GGAGMTSLTGVTVTYTEVIPTSKQMAEFYVWQEGYESYATIRYEDRVVEVERGGEMHLTLPNLVNGELSDEGATIVRYSDDLEAAGINDDIQFMQYLKTISNSGFQVYRMNPWWEVFSHNEDMGEVYDTFYDAVNGGIDYILDDRNW
Ga0209298_1000170616F093864GGAGMYQYNVEFVLERMVIITSVEIDEPDTPDDAIIQVARNNILSYYKIDPEVLHLQDVIVHEV
Ga0209298_1000170618F016662GGAGMYLVAVTEVIYSEEYIIKEMLATGDYGVHGHPISHEAIVEFVKDREWQIEHHLFLDRYKDVPVHIAIKDEDGTDVFFAKNKIEVK
Ga0209298_1000170619F043404AGGMYQPTKRTKMIDTDNPLLQTLADDFVDLHKVGGIELEQWETAYNFVKHFYHTEEMVQIIIREKR
Ga0209298_1000170621F008496AGGAGVDYPIPATVTQMPESNATFVKEMVEAGELKPLYDPKATIVVRKGYYYGTPSDSKFDLENADDISRTYWRLDALQESNSRNSKAVDKLKDYLVENYDEIGEEHATEIANIFSIDLSKEVEVEFTVTIKATISMPVNEEVSDLSIYDFDITLESNESKYEVQDFDADIDSIDERY
Ga0209298_1000170629F027180N/AMKLFKKKEVEDTFTKLDRLMSEMATSDTYIEYLREREGM
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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