Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10001910 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10001910 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13256
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (81.25%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

13256

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (81.25%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F006891	Metagenome	362	Y
F007747	Metagenome / Metatranscriptome	345	Y
F016963	Metagenome	243	N
F026867	Metagenome	196	Y
F031026	Metagenome	183	N
F035218	Metagenome / Metatranscriptome	172	Y
F043284	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_1000191010	F005502	AGG	MRALCNVVLTFLAFFGFPATQASNVMIDMRPDAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSRIRVIGAKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEKQFNAMRLPKVAMVEVTK
Ga0209298_1000191011	F016963	GGAGG	VIELLPEQSTHEQLLNRVRSLARELAEAKAALAAAEGRENDLIDRIRAGL
Ga0209298_100019102	F043284	AGG	MKLTPVINKLNVTRDKALELIGKTIGLAAEAGEIINQARTNGDNIVDLCKEAGITEEVGKRYEKVAAAQPKLTNGEADPSLMRQTYLRIGIMPDPITVSEPSEPKHFLFPIMKARQWLASRGLKFISQDKELRKQFLAEAEPIVNAYKEMTQ
Ga0209298_1000191020	F026867	N/A	MSLGRLNDIAMKLRQENQALSLRQLGAAYGFGYVRIKQMQALPGFPMLAGKVIPSDFDRWRLMQTGLSSQHRGDRLRSAAGTAHALTSRSGSRVAWRQIESTLKAAIESHGLPEGSGSSD
Ga0209298_1000191027	F031026	GGA	MPGGRIALLLIFSLALASCATTSQTQDGPPPSQDSISYFIYAWDKAERTNKPCPQAYRDLYAQALKALSDSLAETERERARNQ
Ga0209298_1000191030	F006891	AGG	MSTDQVAELAERLSLVRESIARIETRQGVIMDMLERSQASLGEYHGRLTSMERDAHTIKTRLWLVALVSGAVVSTAWELIKRRLGF
Ga0209298_1000191032	F035218	N/A	GTGGVASIGNTGGFNINLNAGSAANGTSKAGYQDPTAAFMTASANKIDYSKRIRFSIGGMMYMGSTNSVIRMVFGGTGNATDAPLAGVDGLTIKGFGVEFALQSSVIQARLIGYNASYLTPTSYTTLTNGFGTTTSDNRFFGVVIESDGSGNINLYGAESSLNPNINIGQVPLLTLAGGPTNDTSTNRFGPEIHCSNSSSLPTASPSAILQSTHWLLDVQ
Ga0209298_100019106	F007747	GGAGG	MKDLGKITFGKARPAPKQLLVDVTYDAKTAKALHAFGLKQLKKDEKAVIQYVIEKALEGFSKK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10001910

Overview

Ecosystem & Geography

Associated Families

Sequences