NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10003245

Scaffold Ga0209298_10003245


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10003245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9810
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (55.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000744Metagenome / Metatranscriptome909Y
F036207Metagenome / Metatranscriptome170Y
F104427Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000324513F104427GGAMNNEEIKSFIQAFGDFMEHFEAEELYYEGCKVYENHRAEARRIQEQEIEAKAAELEVTVDYYIAEFM
Ga0209298_1000324516F000744GGAGMTEDFVRLNVHEIGILLSSLELLSVSEEKVIAKDYGSAPALYNKLHSIYEQMDRSTVELRYDFTPSF
Ga0209298_100032456F036207N/AMFNFISGTIFGIIVATIGFNGVATVLNGIMFQIQKQTLELTQPQLPPPTNDQRNQLL
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