NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10003599

Scaffold Ga0209298_10003599


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10003599 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9265
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005502Metagenome / Metatranscriptome398N
F007747Metagenome / Metatranscriptome345Y
F016963Metagenome243N
F033352Metagenome / Metatranscriptome177N
F043823Metagenome155N
F072095Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_1000359911F033352GAGGMTDLTKFRLIENIEVMACRNSAERVVKAINRGDLAQAKDLARKHEIAWHLADREFQDLNQPHRNNDFCDDK
Ga0209298_1000359914F016963GGAGMIEILPEQSTHEQLLNRVRSLARELAEAKAALAAAEVRENDLIERMRPGL
Ga0209298_1000359915F005502GAGGMRTLLSFIALLGFTTTKLSNALIDLRPIAKKIDVKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRVMGGKREWVAVDTGTAVKSKKASGGKLPVVDVFAASEKQFKAMRLPKVAMVEVMK
Ga0209298_1000359920F007747AGGAGGMKDLGKITFGKARPAPKQVLVDVTYDAKTAKELHSFGLKQLKKDPEAVIEYVIVKALKGFAKK
Ga0209298_100035994F043823N/AMKKAKTNLTIDLKVKRNGERLAKKNGLSLSAYITTLLVKELAKENRR
Ga0209298_100035998F072095AGGAGVSVRDLEQEGVLPISAAQSYGSAQLSQTTALIDLQTKHRDLRNRLDRIEEILQSLLKKNGVQS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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