Scaffold Ga0209298

Basic Information
Taxon OID	3300027973 Open in IMG/M
Scaffold ID	Ga0209298_10005037 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027973 Open in IMG/M

Scaffold ID

Ga0209298_10005037 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7591
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7591

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (18.75%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F010673	Metagenome	300	Y
F074789	Metagenome	119	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209298_100050371	F005388	N/A	MACTNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGSNSGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAVADSSFTQVETIPSGVNELPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFITYSSDGPVFPLYIGLEASQRIAQNNPAFRDDQRFADMGTGEGAQLLKRIGANRVIKNFRHVPNLFPPRYSYAGGKYTLVQPFTSTSGTKGTVFSVNSSWTTAAYEAAFIVTPYVFKSHIVRPVNRVGDLAWMPTNYMGEWQW
Ga0209298_1000503711	F010673	N/A	MNPKLIPILERIIARETILLSFHADRLPQSALAYIRQNYRMDSFLSDEEQDLIEMLAPFADNIANSFREDESSDASKYHLFQDGSLWLGTNAYQSIWADATDFAVEILLPRMELSRMDADLLRAIDMDDAVESVLADFYSSFAHILNRDCGIPYCDAREHWDAYSRQLGDGAREESELGGSQSGRAEGLRFAESFTINA
Ga0209298_1000503714	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILTGEEAESGATPLSIYDDNKHICSLVAKDGHQILELIIEREEGDKLCPGTPDLETL
Ga0209298_1000503716	F001964	GGAGG	MSRNLFAKPVYKVQLSGAIGWSDLKERVVKFETVEFSSRKDAERAAKELNPGEYTQGRIRVVPVELGEDYDVYPTAERSKP
Ga0209298_100050373	F000922	AGTAG	VTQKEWNQAKALYLSGKTWKAIGSELKLNFATLTSKASKEGITKVRKEMRNTISHKETVSIESLSAIVRSKLAADAASTLERIDSYDLDGIKDESLREGILQSVSKRSALVFGWSEGNESTSVSINLLGSMPDKLFHVEQSVNPV
Ga0209298_100050378	F074789	N/A	MKTTIETFRALESDGLVAIRAFPETESYFDVFGESDSDQERQEMIDLINRAGCWFVQSYYFADGDWHHADCIGMCVYSNPLDPAENCYVEDLMRAAIDALEMQSTEGAMI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209298_10005037

Overview

Ecosystem & Geography

Associated Families

Sequences