NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10021001

Scaffold Ga0209298_10021001


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10021001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3264
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F004010Metagenome / Metatranscriptome457Y
F025457Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100210013F004010AGGAGGMPLGKDVSKNMSELAKDNRKKGKERGAGGKPRSRQQMIAIALSAAGKSNKSPRKFRMRSG
Ga0209298_100210014F002826AGGMQSEAKARLKWGRDILLSAREKLVVERDRASHGHAIDMIQIITMVDAAALICKEIVESE
Ga0209298_100210016F025457GGAGGMKLWTNNTNSIHKVDDNLLHVRNTYVLPDELTGGIWTDSIPCPHKIKPYYKGRSAGGATAVYRAGAIGDAIIATAFVNYLVQESGGVVDVYAPARNLPLYAGLGAKLYPLPCTLEAWESYDSHLPTDDLFSGQVGDTKLGTGPGNCYKRIYEWMGVWDEKTMAKYCKPVLNLVEQDHDELKALGKWPLPAKYFAYHVSSSGPTRTYPPKMGQDAVLALL
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