NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10026131

Scaffold Ga0209298_10026131


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10026131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2869
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019829Metagenome227Y
F063688Metagenome129N
F082693Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100261312F019829N/AMTEYPIPDPGLTESTRQMYTEKYAETFKNFVDEVFRPNFVPAPKPVDHSILLDELAILREKYLSGTPSDEHKFAAAVITAAMAVIIGI
Ga0209298_100261313F082693AGGMAQINERVTIRLNSQDRTELNYLYQERERQTKELGARDTFTSAYTPKASFTGLVAEYAFAKWFGVEFVIKPYDPANDDVLGYQIKATERYNGCLIKQPHNPSGIYILGIVLNDYTEISFRGWKDSNEIQRACYWRADVPKPGYFVPQAALWPLEDLPETNELQTHRTTGLW
Ga0209298_100261315F063688N/AMETMSRYNSNYGSHDQLQDLRKLNMELHHELDAIKRLLDETTKELHQSQDELTLAIEALVRARDIKP
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