NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209298_10068946

Scaffold Ga0209298_10068946


Overview

Basic Information
Taxon OID3300027973 Open in IMG/M
Scaffold IDGa0209298_10068946 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1598
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002826Metagenome / Metatranscriptome527Y
F007741Metagenome / Metatranscriptome345N
F037193Metagenome / Metatranscriptome168Y
F102823Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209298_100689461F007741AGGAGMKLWTNNTNAIHKVDDNMLYPRTTYVLPDELTGPTWDDSIPCPHKIKPYYKGRAAGGATAVYRAGAIGDAIIATAFVNYLVQESGGVVEVYAPARNLPLYAGLGAKLWPLPSSLEAWDSFDAHLPTDDLFSGQVGNTKLGTGGGNCYQRIYEWMGVWDEKKMAKYCKPVLHLIEPDHEELKAMGKWPLPSPFF
Ga0209298_100689462F102823AGGAMSAIYDWIIVGAGLAIGKLLVAIAVITIVTAILAVFFIIEEKTK
Ga0209298_100689464F037193GGAGGMKTKDELAMQVKKEWDEKGWRWKLSLSAGGFTSEIYCYGTAEEGYFNCVRELVDHAYQMQSA
Ga0209298_100689465F002826N/AMQVEAKDRLKWAREILLIARNKLVIERDRATHGHAIDMIQIITMVDAASLVCKEVVGGDDENKG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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