NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209299_1000015

Scaffold Ga0209299_1000015


Overview

Basic Information
Taxon OID3300027974 Open in IMG/M
Scaffold IDGa0209299_1000015 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106921
Total Scaffold Genes164 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)117 (71.34%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006844Metagenome / Metatranscriptome363Y
F009882Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0209299_1000015108F009882AGAAGMSTNINDAVTIDKLEVPYNPNLLVTYKAIAGTYAAPEEPTYLTSKVTDLEWDLHSARAREEALRSLQGTVRQLEDNIVEWYDPNYSKEEVLVALCELFGINPVKEIEVQGTVTFSGTISVPMSEIADFDLSNVSIEAELSSYDYDADLNVDEVSLEDHY
Ga0209299_1000015117F006844AGGAGMARWEVEVIFEPTGDYMNFEYETDNEDEDSIFNEISNQLSIVPNLVENNEVE
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