NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209299_1001465

Scaffold Ga0209299_1001465


Overview

Basic Information
Taxon OID3300027974 Open in IMG/M
Scaffold IDGa0209299_1001465 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13032
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F004599Metagenome / Metatranscriptome431N
F006539Metagenome / Metatranscriptome370Y

Sequences

Protein IDFamilyRBSSequence
Ga0209299_100146510F006539GGAMIETTAPWIVLYCTLGYFIAWGIYSTIKDNAFQSGYWKGRKDGYDMHRRITDSKRDQVFDYDKN
Ga0209299_100146512F004599GGAGGMAFNLADYEDVATLNKWFISNFPQGRSDISVINHDAVNGYILVQATLWRDSTDQQPCVSNIAFGARESYIQNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMRKVESEPIKNIYGKSGNSQVIEMALRKSFADDAKPASEPTTWSVGDIAEALSSKPKQQECVHGLMILKEGTAKTGKPYYGYVCSAPKGEQCDAKWAVTAANGSWFFREEE
Ga0209299_100146514F002162GAGGMLFLSFNQSDSIVPNYEYACDREGSSIVLDLPMQHEIPFCQVCGFELTRVFTAVPAIFKGTGWAGKSG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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