Scaffold Ga0209299_1027241

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209299_1027241

Scaffold Ga0209299_1027241

Overview

Basic Information
Taxon OID	3300027974 Open in IMG/M
Scaffold ID	Ga0209299_1027241 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2514
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010599	Metagenome / Metatranscriptome	301	Y
F017301	Metagenome / Metatranscriptome	241	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209299_10272415	F010599	GGA	LIFFATLSFSFGLSYWATFDKLKKSNLLLAELFIKTRALEELNSQVNNGISMSDDTIHKENFIKFLSDSRDWAFEYIEKSQQTIKEVSDELKVKGLDNYSDRLLALLPEENFKTYEK
Ga0209299_10272418	F017301	AGGAGG	MNNLLNDKTKAMIASYGRSVLGAVIALYMAGVTDPKDLWAALVAALAPVALRALNPNDKAFGVLPDTGIISDALGKIVPVKSAPKKKAAKKK

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