NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209299_1150173

Scaffold Ga0209299_1150173


Overview

Basic Information
Taxon OID3300027974 Open in IMG/M
Scaffold IDGa0209299_1150173 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)879
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032869Metagenome / Metatranscriptome179Y
F066525Metagenome126Y
F086659Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209299_11501731F032869N/AYFKINTTNGFVPPVGDDSQRPTAYAVIGMTRYNINSKALEVWDGVTWASPAGSSGAVSETQANDIAAQFALILG
Ga0209299_11501732F086659AGGAMPTQFKHSVNTGIGTTPVDVVQIPLGARATVIGCNLANVTEYDTVIADIQVVGEDTTVSYLVKGIAIPPNTSIKVVTGGEKLIMPSNTELRLTVDTADSVDATVSYVEIS
Ga0209299_11501733F066525AGGAMTSPYYLGTTPIESLGDSPRYWYGLRRNEDGELFLVRSDQLSDLGAYELNIPGPPEEDYDNFEAGVDYFDGLDEEHELINENMKYPQYKWDNRALFYYVDGE
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