NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209299_1185314

Scaffold Ga0209299_1185314


Overview

Basic Information
Taxon OID3300027974 Open in IMG/M
Scaffold IDGa0209299_1185314 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)768
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005528Metagenome397Y

Sequences

Protein IDFamilyRBSSequence
Ga0209299_11853141F005528N/APVTSFWLRYPCTYERTTMRILSAIMATVATLTMSLGIAHAAYAPAQPSVAVIALQPLWQADRLDPIQPIRYRHGDVSWLPSLAKQAGWPDHAIGKLSELVLRESGGCPARRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDLSRNKWAAICRQMNICTQAPLLDPLTNLKAGLVLYNLSGFEPWNPCNWRICKASTTSVP
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