Scaffold Ga0209702_10000621

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209702_10000621

Scaffold Ga0209702_10000621

Overview

Basic Information
Taxon OID	3300027976 Open in IMG/M
Scaffold ID	Ga0209702_10000621 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	75079
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	29 (53.70%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location Name	Lake Fryxell, Antarctica
Coordinates	Lat. (^o)	-77.605	Long. (^o)	163.163	Alt. (m)		Depth (m)	18
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065448	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209702_1000062129	F065448	N/A	MHLMDELVLISKNACSIISVSWISILIVGRIYDFHVAYISFIERTKSEEWLLEHCQDDHFFHKMAYHTDVCDLVVGNSIIWPSLYGINESMSKMKLCGFHDCSTLLGIVYNGGIPVMLCILLLYIVTPSFILPLLQRMYYVYCENTLMAKCSPNIRSASPRRHDAKHAMYYDVMDDVAADIHSGAKNRFV

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