NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10001413

Scaffold Ga0209702_10001413


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10001413 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46040
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (62.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F012571Metagenome279Y
F026542Metagenome / Metatranscriptome197Y
F078617Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0209702_1000141310F026542N/AMNNQNLEKLQQLLTDFLGPQIQEVITSYAETKATGKYFIEIPDEDTIDLGLDVLASLVAKSSNVYGRAARFAGMARANYKIMEGKYKRKYKSSRVGKNEAEREAAAMEAAEDEYLALITCEAILSLAESMESAARISSESTRKLIDKVQSMQIASSREEKGRYLDSDFTTY
Ga0209702_1000141319F004789GGAGMIKNPSERWCWSYCGSCSRCGDKGRYAQCNGCSGRFDPKGVIAVNNDDFCDCKNGNLRWTPKSGGKSFIVKFKSNPFKGKVTYQKKSEDERDWDSYVRDMREKMDDPTWNPISITED
Ga0209702_1000141321F012571AGGAGMPDRIQNPDDVIGVCSECKSDQPMKYMENSPFAQAGSPVPCKYCGGIVIIVYRETRNSSLNNSDNTRGI
Ga0209702_1000141331F078617AGGMRTKVFLSGAIEEVGIYAHGWRDRAVCLLDQHGFHAVNPMDFCLEETGCEPKEIVSKNMFLQKQCDIILVEYMIPNRAYIGTDYEMTLAHMGNQPVITFAHDSYKQRVYLNFLSTKVAASLEDAVEYIAYTYPSKK
Ga0209702_100014136F007028AGTAGGMPKISKSAQEHSSSGSPVDNVVSIVAGDISLTTAPILICGVNRKINIGNFENIDVYAAVAIPLPNASFEDREGLRLMIEDAAAYGFSAVSKETGDRYSLIKESQQGK
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