NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10003586

Scaffold Ga0209702_10003586


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10003586 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24181
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (5.66%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F003038Metagenome / Metatranscriptome511Y
F006840Metagenome / Metatranscriptome363Y
F012010Metagenome / Metatranscriptome284Y
F038206Metagenome / Metatranscriptome166Y
F052406Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0209702_1000358612F038206N/AMFLPITFRDHDGPYIEHLNVSHITRISFVNQMNPDAGTKIHLKTGEVLTTPSPLDIVSQAIDECWKSAAAMILFNLLAEKSKLYKGFEESLEETDLDPV
Ga0209702_100035862F003038N/AMALSTTDLGTGGTGMAKTIAPGNHTLKLNNIFLDDFKFIDGAKHLMLNLETEPIEGFEGFMIDKDDESKGHYKGQIGRVKASQYAFADGETKSGIKIQRDRSILIFLQNFCKALDINEWFTQQDGKHETIDAFIDAFNANAQFQDIYMDFCVAGKEYMGKTGYINYDMNIAKADRGAYGFGAKGNSKVIVYNEALHLKKTEVKTVTAFGDDDDDLSIPSKASSDFSLD
Ga0209702_1000358634F000716N/AMEKLKQNIKDYQMRSHTVMAYEQDNYNSYQNYLYKRALYGLNSLEQSELLTLCSKKKQRIVNVYKKAQVVLNKLKQEITIKYSNFIFESLFPESPITKFLILNTETDDKFVNTLTFKDLNINKQQIISIFIVEGVLPKNFLSLTTPQNQLPRLKNAQKA
Ga0209702_1000358644F052406N/AMIRVDIFSFLASDAGELLKMQTRLNQWLTAGTLKKYKVYTTATHIIFNVARLKDQA
Ga0209702_1000358648F006840N/AMSTFKMLRGRTILVDVPQRKESAIKLSEKDEDQVMKDAMKLWNKLTVYAVGDKVEDVAAGDKVYIRTSALNLESVERIDIDGGVKFVLNEGDVVIVW
Ga0209702_100035867F012010N/AMTEIFNRLVKENITPNAYYVLHCIKDKIVPQKFINKELQVEKLKRDNWLNENLTLTPKSIIFIEELNGFFKKSKKKTSQILLGQDFIDKIQEYVEIFPNRKLSSGKYARVHAKNLEVSFRWFFENYDYEWQAILLATEKYVDEYSIRNYEYMRTAQYFIRKQSIDKSFESDLATYCDLINNSSEEDTFYFKDNVV
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