NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10012166

Scaffold Ga0209702_10012166


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10012166 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8690
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017137Metagenome / Metatranscriptome242Y
F060949Metagenome / Metatranscriptome132N
F066826Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0209702_1001216618F017137GGAGMEENLFETEVDRARKVRYEQREAKRAPKIQVDQVFTLNAWLIGVTVAFISSAIVSFNGITSVAVFVGLSQQWMAALFFFFIELMYLLFLVAYLILESREKEDSRGALAGMIFFAAIAVLANGFHTFDYWEWAFTEPRAWAGVILSVSAPIAIISASKMASRVIFAKALVV
Ga0209702_100121662F066826AGGAGMASTTSPDSIVYPDASDPIAPLNAVFQDLAESVQTALDARPAGSGGAFETSFLLMGA
Ga0209702_100121667F060949GAGGMATYHELVTLSNSTATELTPPGKVHSGLDLTVQNADETAVVYIGAAGVTSTDYGFKIQPGVAFSVELNPRDQLFAISGTNGSKVALLRVLLEDA
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