NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10012663

Scaffold Ga0209702_10012663


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10012663 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8364
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (9.09%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006069Metagenome / Metatranscriptome382Y
F024033Metagenome / Metatranscriptome207Y
F062908Metagenome / Metatranscriptome130Y
F071403Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100126632F062908N/AMDISNNQRNLFGVIDRAYETYQRPIEKEVMNMGHINLIQARSSANYPYQKYNQLDVSTHIGCIGKSNSQRSDLPNPLIKCTPRRNETASRFNYGYDKQITTLPTEVSGVLIPNNFLRIIPNRSTQLCYQTTILPFNREIYNLSQNVQKYCPPDQDIFPNDNFQIKASRQRLTREELQGLPKLPATPAVP
Ga0209702_100126636F006069N/AMIIEKPLKGFDNKLLYDKLNYPQCSCGACPRFYWNMLNIGSRGSGKTYTICKMIKHYEKHKITKDGVEYKLRTHLISPTIQANEIYQSLESLDMEKDAHDDYSDKLILDIIKDIKAEKAEYDKYLLYKKSYDTFLKTPETKYERLYETNPEIFNILEEYDYIHPREFKHEPPKINIIILDDLLGSDAFTRKTKSVLTNAMIKNRHIGVNFAVLVQSIRAVPKTIRMNCSIFQLAAFKNKKIILNDIYEEVSNVIGIDEFEMLYDHATNKKFGSLIIDTTNSKRFLSNLDFELFFDNKIKSNLIIKDE
Ga0209702_100126637F024033N/AMNDIDEISRDLLKRKAQLLYPECESWIMDLALEGYYNSLKIPIVEE
Ga0209702_100126639F071403N/AMDINKTRTITSFISSANRQPQDNTYNFTIDYPDGILSCRPNEYMEINVLSFDMPNTMYNINNKNNEFDIITPEETVRKTIPSGNYSVKTFMAKLKTLIANDFITITYNDAQNTYTFTKSNELEEEYKIKPISIGQLIGVLDNEEYEITTSGYTTGIINLINYNKIMVRTENVAYYYSNVENIRSNNNSVFNSNIIFWKTKTDIDPFKVLSYNNEDGGNSFVYKVENTQINSIIFQLRNERNEIITDAPNYMMVIQYNFYEKKDIINILISIDTIIKEVYNTILFTINRLKLLL
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