NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10014334

Scaffold Ga0209702_10014334


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10014334 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7539
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006069Metagenome / Metatranscriptome382Y
F024033Metagenome / Metatranscriptome207Y
F062908Metagenome / Metatranscriptome130Y
F071403Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100143341F062908N/AMDILNTQRNLFAVIDRANDTHQKPIDEKVMLMGHIDLINARSDANYIRPLYNQLDIATHLGCIGKANSQSSELTDPIIKCTPRHNESASRFNYAYDMQITTRPTEVSGINIPNNQLRIIPNRGTQLCYQKTIMPFNKELMNLSRNIIGVCGTDSS
Ga0209702_100143344F006069N/AMIIEKPLKGFDNKLLYDKLNYPQCSCGLCPRFFFNSLHVGARGSGKTYTVVQMIKHYEKHKIMRDGVEYKLRTHLISPTIQANEIYQSLDSLDMKKDAHDNYSDQLLLDIIEDVKAEKAEYEKYLLYKSSYEKFVKTPESKYEKLYETNPEIFNLLEEYDYIHPKDFKHEKPAVNIIIMDDLLGSSAFTRKTQSVLTNAMIKNRHMQICFAVLVQSIRAVPKTIRMNCSVFQLAKFGSKKVILNDIYEEVSNIITIEKFEELYDFATNKKYGSLIIDTTHGEKRFLSNLDSELFITDEKK
Ga0209702_100143345F024033N/AMDDIDKDLLRRKAELLYPDCEQWVLDLAIEAYFNLLKSPVIVEEPMIEIN
Ga0209702_100143347F071403N/AMDINKTRTITSFISSANRQPQDQSYNFTIDYPDGILTCRPNEYMEINVLSFDMPNTMYNINSKNNEFDIITPDETVRKTIPSGNYSVKTFMAKLKTLIENDFITITYNDAQNTYTFTKSDELIEEYKIKPISIGQLIGVLDNQEYEITTSGYTTGLINLINYNKVMVRTENVAYYYSNVENIRSNNNSVFNSNIIFWKTKTDIDPFKVLSYNNEDGGNSFVYKVENTQINSIIFQLRNERNEIITDAPDYMMVIQYNFYEKKDIINILISIDTIIKEMYNTILFAINRLKLLL
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