NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10025196

Scaffold Ga0209702_10025196


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10025196 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4480
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N
F009733Metagenome313N
F017930Metagenome238Y
F038569Metagenome165N

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100251962F006056N/AMTLQITLAGSVIDLGLFDYSLAIAHGRSDVTSSPTASNAQLVLRGDTGPLLDLADTVAISFDGVARFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGVTGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPSTALDAIGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTLAGIWANQIGTWAEAEGTWADAPLFPPSFNLEAPGVIFAPTWAKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLNAQDTTALLNLVSGALVTVRGLPASGPSPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVAPAFTWSEVGAGAQWFEIITQSDLVRL
Ga0209702_100251964F017930GGAGGMDIAQILTSNYSGSEWTLNGDDYAGLTWLSDTPKPTEQEITDAYPLAVAAKETTEANRLATIQAARDHAASLGFTDAMLAVMYPQLEETLSE
Ga0209702_100251965F009733AGGAGVSEIDQELHVDTVEADPVKKKPTSSKHPKMADETERARAIVRAKLKG
Ga0209702_100251966F038569N/AMKPNGPGLLSEPNSKGKAVDFGDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQTIQPGFRNGGESLADVAAKVDRISEKLGL

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