NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209702_10027010

Scaffold Ga0209702_10027010


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10027010 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4195
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N
F009733Metagenome313N
F010818Metagenome / Metatranscriptome298Y
F017930Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100270103F010818AGGVDFRDVVGLVATSLAALAIMGTGLVWLIRNVVRDEIKKATQPIQPGFRNGGDSLSDVSSKVDRIIEKLGL
Ga0209702_100270104F009733GGAGGVSEIDQELHVDTVEPEPIKKKPTSSKHPKVADSTERARAIVRAKLKG
Ga0209702_100270105F017930GGAGGMNIATVLEYVRPGEEWILDGDDYAGLTWLSDTPKPTEQEVADAYPLAVKAVADKEKARVKAISDARAFALSLGFTEAMLAVMYPQLTEAPSE
Ga0209702_100270107F006056N/AMTLQITLNGSVIDLALFDYSLAIAHGRSDVTSSPTASNAQLVLRGDTGPLLDLADTVAISFDGVARFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGVSGYIEQSARQRVTGILDATGLDYLNAGDPDITLYAILEADAQPTTALDALGRIAQGTGATYYDDPTGRIIFEDYGNRGSTTFAGIWANQVGTWSEALGTWEDAPIFPPSFNLEAPGVIFAPTWSKTLTPLINDVTVTYGPDLSVTQTDSASITQYGRREYRLDTGIKTITDATTRAAGIMTAQANGLWNLGQISVLVDQLDETDTTALLNLVSGALVTVRGLPASGPYPDFNGIVEGWTDSYNNGQHIMTLSISDPRFSLQVLQWGQVYPAFTWSEVGAGAQWFEIVTQSDLVRL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.