NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10048473

Scaffold Ga0209702_10048473


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10048473 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2466
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009265Metagenome / Metatranscriptome320Y
F009746Metagenome / Metatranscriptome313N
F029096Metagenome189Y

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100484732F029096AGGAMAEPRTTIKIQPDMTDLRGLLKALNEMDKDSQKGLKDEVYSISAWTAQRIQAAATGHPYMPLQAAVIVQTVRASRDRLPTVLIGGSKGRASGGANAGQLLFGNEFGGERNAFGNLTSFPNGGYRFPIRSERVGRGNAGYWIFPTLKGAQRDITQQWKNAVEKVYDNWKRGI
Ga0209702_100484733F009265AGGMKYEVTTKQGNNYIVSDDSAWLWIELERELGVTVTQAAEKMSQGSLDVITCMLFKAARQQGKTELKTQQMWVENEFDSFDVVDEPDPKDNLQTA
Ga0209702_100484735F009746AGGMCVGILANLVTLRDDLAATLALAGRVVYSFPNENITPPAIVLVPGSPYITVSAIGGARLNVRFDITCIVGAADNRAALANIETLILSVTDLLANTNALLGGWNQPTVQTIGNSEMLISQISIELVTTN
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