Basic Information | |
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Taxon OID | 3300027976 Open in IMG/M |
Scaffold ID | Ga0209702_10052205 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2314 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Fryxell, Antarctica | |||||||
Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001894 | Metagenome / Metatranscriptome | 621 | Y |
F027899 | Metagenome / Metatranscriptome | 193 | Y |
F068214 | Metagenome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209702_100522051 | F027899 | AGG | MYQLDTPYSSQILFLNSENSVFKNIDGQGEYVYSFQTPIQLPTNCQMLISITDAQLPNIIPNVTSSNNKISFSIPTFSKLFTITLTEDDGTVDKVYNAYEWLASVNEKITYESLDQFSLYGEYHSSKIKWFCNYPFKI |
Ga0209702_100522052 | F068214 | N/A | MSLQHMTVKLVPQTNNVIPPGKFIYTDETFLIQPPKYVQGESFPQQGKELVPAHFSFGHINPDFTPVYSPATRMTMNYGSYIYNSVTGYQ |
Ga0209702_100522054 | F001894 | AGG | MNDYAKISQIHYRYQQGENKERQDKYATRKLSRLGYSLDSSNTNKDVLTATKGDKVHINYTGTNINNPRDLLSDVALGTGTQRSNPQFKQRRQKTRDIMRQYGDDKEYSLGGHSLGGSIALNTLSQSKSIRDRVKEAHVFNPGYTKLFHESIKVDKPAKKELDKKVNIHRVKGDIVSAHANKETAFGNLFEYKHEDKSSDLMDKHSLDTFIESNL |
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