NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10052312

Scaffold Ga0209702_10052312


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10052312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2309
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006056Metagenome382N
F009733Metagenome313N
F061563Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100523121F006056N/AHGRSDVTSSPTASNTQIVLRGDTGPLLELADTVAISFDGVARFTGAISDLNVSFISTTTPTAITTITAMGNLAKLGYTDVGASGYSEQTARQRVETILDATNETFVNGGDPDITLYSILEADAQPTTALDALQQVAAWTGATFFDDPLGRIVFEDYGNRGQTTFAGIWSNQIGTWADAEGTWGSKPTTIGSLPLNAEGIIFAPTWAKTLTPLINDVTVVYGPDLSENQTDSASITQYGRREYRLDTQIKLEADAITRAASIITAQANGLWNLGQVSILMSELDADQTTQVLNLVSGSLVNVIGLPASGPYSQFNGILEGWTDSYNNGQHILTLSISDPRFSYQMLEFGEVTDTLTWGDVGAAAQWYEIITNSDLIGA
Ga0209702_100523123F061563GGAGGMINVTQAVSSLRPNIEWSMVGDDVAGITWHTPDVEPLTEAEVTKEIKRLEALAVTTEANRIAALQAAREFALSLGFTEAMLAVMYPQLTEGA
Ga0209702_100523124F009733GGAMSEIDQELHVDTVEPEPVKKKPTSSKHPKVADETERARAIVRAKLKG
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