NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209702_10053579

Scaffold Ga0209702_10053579


Overview

Basic Information
Taxon OID3300027976 Open in IMG/M
Scaffold IDGa0209702_10053579 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2262
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024794Metagenome / Metatranscriptome204Y
F072834Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209702_100535792F072834AGGAMIDNAVKELEEWVGNNHTELADWASDAKSLTEQFKAGGLAEDEYLELMEDLKRSQKISDAADALAVRSRANELLDNLITAAGVVL
Ga0209702_100535793F024794AGGAGMKRLLILFAVVMSMSGCSTLQESWDYFDMASFDNNEYLLSVNVRTQANLGARKCGTPEVNAEVSKLWGDTLKLKNYAESIPNNEETVIMTSELLEIVRGLDNRYNIDKKTVSMKYCTIKFTNIEKNATIITNVIGRKPHDR
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