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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027976 Open in IMG/M |
| Scaffold ID | Ga0209702_10054076 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2244 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Fryxell, Antarctica | |||||||
| Coordinates | Lat. (o) | -77.605 | Long. (o) | 163.163 | Alt. (m) | Depth (m) | 18 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F002085 | Metagenome / Metatranscriptome | 595 | Y |
| F068572 | Metagenome / Metatranscriptome | 124 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209702_100540763 | F002085 | GAG | MNVIPEVVGTNNIRYADFVRVTTPDAVYRFATTPQAITVTAVDSQPFDAVGLLMKVGDTQRDIKSTANETTFTLVGIDTAMLGWVLGNQIKGSQIEAWKGFFSTDGALITTGGQGGLYQFFNGYVNSFAINEEWFEELRQFVGVVSVAASSIQLILKNRTAGRFTNDNNWQFFAMGDTSMNRVSFITNINYQFGKGATANS |
| Ga0209702_100540764 | F000934 | AGCAGG | MSLNLILANSESVGINDQRFVGQVVSRNQRISTSEIITVVPFAFEMKPMNYLLYSQSRGLLNSLRIPDKALPQYLNFGSTGWVNYIKYQGNLSAGQIATCQWQTSSANKNLVLGNLPAISSSFFVVRVGDFCQVGLYSYIATADVTRGSGSTVTIPVHRNLITPVTSPINAVIGEFGTTVSMGGATYTGITFQVVLRDYPNYTLIPMTNDSFIQWSGTFKAFESVL |
| Ga0209702_100540765 | F068572 | N/A | VTYNGPVIQNMQAIDTQSGIQFLAKNKMTIWSMNQSANRSIPAGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |