Scaffold Ga0209168_10000206

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209168_10000206

Scaffold Ga0209168_10000206

Overview

Basic Information
Taxon OID	3300027986 Open in IMG/M
Scaffold ID	Ga0209168_10000206 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	67276
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	36 (61.02%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018236	Metagenome / Metatranscriptome	236	Y
F021818	Metagenome / Metatranscriptome	217	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_1000020617	F021818	GGAGG	MYQLCALIEKEKDHRRFLQLINELNELLERKEQRLEDTKEDKQEA
Ga0209168_1000020633	F018236	N/A	MLQAHSILWHYLWVAPNLLFILLGVLLWRRGIGRIFAAFVAFAILSSVGDLAAYLADILPSVSPEAFWRIFWAGLVVESLLKFLVIGEVFSQVFAPYASIARLGKTLVSGCGTLLVLLAAVMAAFSHGDSKFGTVSGAHLLEQTVFITELGLVVFLFLFAAYFHLAWDRLSFGILIGLGVSSCEHLATWAIIANASPSEHVRTLFAFLNSATYHVVVLIWFYYLLVPGKATVKPKISLPENNLAVWNRELERLLQQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.