NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209168_10152381

Scaffold Ga0209168_10152381


Overview

Basic Information
Taxon OID3300027986 Open in IMG/M
Scaffold IDGa0209168_10152381 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003851Metagenome / Metatranscriptome465Y
F026325Metagenome / Metatranscriptome198Y
F043015Metagenome / Metatranscriptome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0209168_101523811F026325GGAGGMTDPASAIKREVHQLVDLQIETLRQPSRLTASDLSDYRVRSEKITTLFHELDQLRRAHF
Ga0209168_101523812F003851GAGGMKQRKLAGASSQTNDENAERVLRALQEARHGRVNTNDPIVEQLRQCPEAFKVGEILGKAFDSLKYAQDGGELGDRYLPPTGTVLPPLV
Ga0209168_101523813F043015N/AVIGLPLEVTFPRLKGIRWRYCTRWDEGPAAVLGMSLLRLGICCPSDWSGSAVDFVERGFRRFCSQNRAADAKRVWVGDLRITDSLFELTEQERNQVDAEREGPADHLYLVGDYEAAASIPIGATLTRLEAEHADLPAAFYEVFTKNLYKWMRVYDYIDAQEHAETWMEDLNDEELEVSVYRKMD
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