NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233418_10082394

Scaffold Ga0233418_10082394


Overview

Basic Information
Taxon OID3300027995 Open in IMG/M
Scaffold IDGa0233418_10082394 Open in IMG/M
Source Dataset NameSediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)946
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameIndonesia: South Sulawesi
CoordinatesLat. (o)-2.7Long. (o)121.4042Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067892Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0233418_100823942F067892N/AMQGGQMQFKIDTANLIKAGTIPVIAAAIAGALWLLGGVLGGLLGIIFLIVAAFAGYWYVNLVLNSGAKPTIVEVAINGAILGAVVALVYGVISWVAISIRFSDLFGFGLGFGIGDILGSVVQGAIAGAIGAAGWYAYKSGMIKTG

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