Scaffold Ga0265350_100025

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265350_100025

Scaffold Ga0265350_100025

Overview

Basic Information
Taxon OID	3300028013 Open in IMG/M
Scaffold ID	Ga0265350_100025 Open in IMG/M
Source Dataset Name	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3116
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9982	Long. (^o)	10.7894	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F056087	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265350_1000251	F056087	N/A	DKERRLHTLEQDLIAAAKGPKIELAVTEIRKKGLVAALRSQTGRR

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