NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265350_101124

Scaffold Ga0265350_101124


Overview

Basic Information
Taxon OID3300028013 Open in IMG/M
Scaffold IDGa0265350_101124 Open in IMG/M
Source Dataset NameSoil microbial communities from Maridalen valley, Oslo, Norway - NSE2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9982Long. (o)10.7894Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007375Metagenome / Metatranscriptome352Y
F010711Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
Ga0265350_1011241F010711N/ANGAAGTLLMDQKKYEDAIAHLEEDRDNPFTMELLVQAYYETGLTDKLHEIEGKLRGTNLPTMEQALVVPAMRSSRPII
Ga0265350_1011243F007375AGGMWIEKLAGGVVRVQTPIGPRYVMPSFFQRVHLLWMFRNFPILPHAVLSGRQQRMVDQLCSEQAFESMAYSGDGMEEAPVIG

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