Scaffold Ga0265354_1000593

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265354_1000593

Scaffold Ga0265354_1000593

Overview

Basic Information
Taxon OID	3300028016 Open in IMG/M
Scaffold ID	Ga0265354_1000593 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6110
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Norway: Oslo
Coordinates	Lat. (^o)	59.9979	Long. (^o)	10.7895	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003375	Metagenome / Metatranscriptome	491	Y
F013584	Metagenome / Metatranscriptome	270	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265354_10005933	F003375	AGG	MYSAAGLAISCPEHARLESEFIEARDRMRGLVRLRNLSQAEERQLAVRVAMAIARLKEHVAAHGCERQG
Ga0265354_10005938	F013584	GGAGG	MAASPGPEGSLVMLWAGEDPALHSSLIEELQSAGIPFIDRPTGDDQVPPSADILPIDWKTQFGFEVAVPSSNRAAAEKILERLLDQEPADMEIAANDSAQPGVVDVKPAHLSATTCAVWSGADETRARFLVEALKENEIPARAETRGSEATVYVPPEEEMLAREIIREIVEGAPPA

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