NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256381_1006172

Scaffold Ga0256381_1006172


Overview

Basic Information
Taxon OID3300028018 Open in IMG/M
Scaffold IDGa0256381_1006172 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1889
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)1600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015264Metagenome / Metatranscriptome256Y
F017722Metagenome / Metatranscriptome239Y

Sequences

Protein IDFamilyRBSSequence
Ga0256381_10061721F015264N/AVAVALERGYSIEQLARGVPDDKFPGLRSVLTETENRSRLIARTEVMRTQNQTSVGFYKEQGFAYVRADDVDGDPGDDYVDPGDPYGRTCAERNGQIYTLEDAANIDDHPNGTLNWQPMPRNYRP
Ga0256381_10061723F017722AGGAGLDTKELRNQAGALLDQAQTAMDQGEMDTFRRLIDEAQVTMTNADEIDAAASQVRKLRGEFNQPLNAIPVTSNDVAVYNAMDTTARIKGDYKPASWVKGLPAMAQPLWVQEQMGDNVKDEARFMTDAFIKWFRSPSEDMFWKTSSPDEIKAMQEDF
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