NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0256381_1011994

Scaffold Ga0256381_1011994


Overview

Basic Information
Taxon OID3300028018 Open in IMG/M
Scaffold IDGa0256381_1011994 Open in IMG/M
Source Dataset NameSeawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1415
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR0-KM15-C219(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)34.0321Long. (o)27.821Alt. (m)Depth (m)1600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004769Metagenome / Metatranscriptome424Y
F011621Metagenome289Y
F032720Metagenome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0256381_10119941F011621GGAGGMPDIGDICRARDLGMVGGRLYIWAECPVCHLQRWTTTRPLDKGTRRPCQDCVRAKAKRVFKIGRAHTIDQV
Ga0256381_10119943F004769GAGGMPGHDQKTTRVQVEVNGFTWRVYGARTGQRWHCHLVELVGPLPLDGPVTQPLRDKIRAALAKALALDESEIARISADLILA
Ga0256381_10119944F032720GAGGMIIPDYEVGQFVRLKPFQSGADGIRCVCNPDKESGLQAPAITAPEFGGCWHGAGTTVLRVFQDGGLLLENRHGFVRGARPDEVCR
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