Scaffold Ga0256382_1034296

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0256382_1034296

Scaffold Ga0256382_1034296

Overview

Basic Information
Taxon OID	3300028022 Open in IMG/M
Scaffold ID	Ga0256382_1034296 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1143
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.0321	Long. (^o)	27.821	Alt. (m)		Depth (m)	750
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F073577	Metagenome / Metatranscriptome	120	N
F089019	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10342961	F089019	N/A	DVDGTSLADMVITAVSFTFENNVARVGRDSSGDAEAYAFGIPSVNITGEVSLMYDANFDFGSGGNVLQDFISGNTATLKLQQGDGTVSTAGEMNIECEIYSTAVNLDPNADTGAVITIPFKVVQPTSSGAASGTAFKFEYADSTPSSGW
Ga0256382_10342962	F073577	AGGAG	MKVKMFDKEWEVKNPTYKEKRELWKLNAMTFVGEELNQDKYFELLQKVEEISGLRPEDYVNKNGDELAMANIDSLLQQIFLSYMGLSDDSKKA

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.