Scaffold Ga0256382_1053435

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256382_1053435

Scaffold Ga0256382_1053435

Overview

Basic Information
Taxon OID	3300028022 Open in IMG/M
Scaffold ID	Ga0256382_1053435 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	943
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.0321	Long. (^o)	27.821	Alt. (m)		Depth (m)	750
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005314	Metagenome	405	Y
F049698	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10534352	F005314	AGGA	MVKPIDITNTVIVPKPQPKYDKLNSFFIGRAPIDNIDEGVEVEANPKDKIKQPHLDNSVIKDTEWTDLY
Ga0256382_10534353	F049698	N/A	MNRKHYAFFLKKNRRKNPIAKDLSDGRYQQRVVKDKTKYTRKEKHGQTNRHYEHSDSSETST

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