NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000076

Scaffold Ga0247723_1000076


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000076 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58123
Total Scaffold Genes79 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (12.66%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045102Metagenome / Metatranscriptome153Y
F069672Metagenome123Y
F103119Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100007621F045102N/AMAKSTAQWVGLAEIIYQYIDQAKLTSAEFRRLWTIGVRGVEEIGLDVHMTPKTVKLMVNANKTVTLPSDFIAFSKVGVFNPSGEVATLRRNPDLTAYKIDQNDRLTSNTDDTQLETFRMQDLAYVNYFDGARYVNVFGAGSLLNSAGQFDVSEDEGIMYLDNDYPYNYVVMEYLSSPADDVDYKVPFQVKEAVLSYIAWKDIEMLPSGRRVTLGDKQIRRKEYYNQKRLANLRVNPVTPWDANEVIRMGQKLVAKA
Ga0247723_100007633F069672N/AMRIIFIILFFIALESKAQYYIMAAPNVAFDTPLRDTKNLLGGTVEVGKYFGDIAVGINSGWWTYDSKDFYQELMVTFPIYGRFSISSAIGYFYYYKDITMEYDLNYTLPLKKEYSFVFSYGAQSAFGGTFGSYSVGINKDFKIK
Ga0247723_100007641F103119N/AMKEVFTDKGLQSAFEKSVDMHETFRKVVSKKVDCANPAEIVGHMSELTEVMGQGVTAKAQFQFLTEKLSFQKCMNLNNQEMGATEKKIVIAYEIGDCSFYNVLCELLIKEAHYKMDLLRSALSYSKQEMNML
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