NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000197

Scaffold Ga0247723_1000197


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000197 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38646
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)48 (84.21%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001396Metagenome / Metatranscriptome705Y
F012451Metagenome / Metatranscriptome280Y
F012663Metagenome / Metatranscriptome278Y
F035228Metagenome / Metatranscriptome172Y
F071029Metagenome / Metatranscriptome122N
F080900Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100019714F080900N/AMKKIVSEIHGLTWTLAGTGMVLITLSGSTRRFGIQITLVAIVVHMVGAILGDKNE
Ga0247723_100019719F012663N/AMLENELLFNLRNDSCITMMQFMCKNCNNLFEADEKPHRGEVCFKCHIKTIRLGFTHGKEDFHGPTIRERQRQIVSDAAANGITAEPVTNWM
Ga0247723_100019720F001396GGAMSSVWVPIIVAVITGPVVVVLQKLRKENTQQHEEGRILLRVIGNKVDKIGSKLDQHIGWHDGKKESK
Ga0247723_100019729F012451AGAAGGMAYQTMTATELRQTVRDITDLDVDDLPDSLLNLYIRDGYYRILDLEKRWNFLEKSFTFNTVAEQKSYRISSFTSDPISEVVSIVDPSGVGFRLDMVGYDEAERTYIGSYDTSGDPLFYAVWEGSIHLFPKPESARTLTVRAYREPTDWIGEDDVVDAAPSLHFSLVYYACSRVYQRLEDTSMAGEYKRSFDEGVSLARTAIMKPTSHAHMRLSAGKTTGRPTFNGWMLNMGRNLQDNA
Ga0247723_100019739F035228GGCGGMSKNQSDYDIPARKFDFHTDLRFGKKGEKLVEDFLDAMSDGSFEVKTDRYRNGRMVLEMTHNPRKKVDEEGKALWKPSGLAITKAKWWVYVYTLDGSFVIVSTDRMKRYLKANKERFNPKKYHGFAMASSNPSKGYLLQPEDVMDMMINTEYDEIRTDK
Ga0247723_10001974F071029GGAMLDDRQQKFLEWLCTPPNGRVPSSEKNYALQESMDDSTLRRWKKKPSFKAAWEKKVSELQQSPERTQKLLDNLYERALSGDNNSAKLYLQATNRLAPMQVNVEHSQKTSEITDAELDALIASVAHSEIESRKEQKQL
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