Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000197 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38646 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (84.21%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001396 | Metagenome / Metatranscriptome | 705 | Y |
F012451 | Metagenome / Metatranscriptome | 280 | Y |
F012663 | Metagenome / Metatranscriptome | 278 | Y |
F035228 | Metagenome / Metatranscriptome | 172 | Y |
F071029 | Metagenome / Metatranscriptome | 122 | N |
F080900 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100019714 | F080900 | N/A | MKKIVSEIHGLTWTLAGTGMVLITLSGSTRRFGIQITLVAIVVHMVGAILGDKNE |
Ga0247723_100019719 | F012663 | N/A | MLENELLFNLRNDSCITMMQFMCKNCNNLFEADEKPHRGEVCFKCHIKTIRLGFTHGKEDFHGPTIRERQRQIVSDAAANGITAEPVTNWM |
Ga0247723_100019720 | F001396 | GGA | MSSVWVPIIVAVITGPVVVVLQKLRKENTQQHEEGRILLRVIGNKVDKIGSKLDQHIGWHDGKKESK |
Ga0247723_100019729 | F012451 | AGAAGG | MAYQTMTATELRQTVRDITDLDVDDLPDSLLNLYIRDGYYRILDLEKRWNFLEKSFTFNTVAEQKSYRISSFTSDPISEVVSIVDPSGVGFRLDMVGYDEAERTYIGSYDTSGDPLFYAVWEGSIHLFPKPESARTLTVRAYREPTDWIGEDDVVDAAPSLHFSLVYYACSRVYQRLEDTSMAGEYKRSFDEGVSLARTAIMKPTSHAHMRLSAGKTTGRPTFNGWMLNMGRNLQDNA |
Ga0247723_100019739 | F035228 | GGCGG | MSKNQSDYDIPARKFDFHTDLRFGKKGEKLVEDFLDAMSDGSFEVKTDRYRNGRMVLEMTHNPRKKVDEEGKALWKPSGLAITKAKWWVYVYTLDGSFVIVSTDRMKRYLKANKERFNPKKYHGFAMASSNPSKGYLLQPEDVMDMMINTEYDEIRTDK |
Ga0247723_10001974 | F071029 | GGA | MLDDRQQKFLEWLCTPPNGRVPSSEKNYALQESMDDSTLRRWKKKPSFKAAWEKKVSELQQSPERTQKLLDNLYERALSGDNNSAKLYLQATNRLAPMQVNVEHSQKTSEITDAELDALIASVAHSEIESRKEQKQL |
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