NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000362

Scaffold Ga0247723_1000362


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000362 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31391
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (69.81%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F054870Metagenome / Metatranscriptome139N
F062760Metagenome130N
F066774Metagenome / Metatranscriptome126Y
F078706Metagenome116N
F082685Metagenome113N
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100036211F062760AGGMKQKDWIVTPHNIKQLMIYLEELIKDGKLPQVTIKEKADSKRSLEANKFLWGRLYKSISNFTGYLPMEVHLLCGHLFLSEQKTINGIQVPYVRSTSDLTVEEFANYIQNIEVYFSNLGWSME
Ga0247723_100036216F066774N/AMTMNNLETWVRQLNGELNVQEIAKTAVSPKEDIVAPYSVFLRMYDKVGLLAATNKRRWAKCNVEFVFDGNSRKLKDVRLINQDNEDGN
Ga0247723_100036221F054870AGGMKKLLTALLIALPIIAVGGESPKLRYNWVEDKYNYAPKEAKLKYNWTADKYEFVAPNSKLKHNSQSGNYEYVQTQIDPYKSEIGE
Ga0247723_100036229F082685AGTAGMDMQEHTKHILDTVSGITVLGTVMKFLPAIAALLSIIWYCIRIFEWARSKFKK
Ga0247723_100036241F000934GAGMSLNTILQVSESIAINDQKLVGQVLSRNQRISTSELLTVQPFEFTMNPMKYLLYSQNRDLLSSLRVADKATEQYLNFTNIGWLNYVAYQGDMTSGQITACQWQTSSANKTLVLGSLPSISSTAYIVKKGDFCQVGRYAYIATADVQRGGSSTVNIPVHRNLIDTLASAVGAVIGQYGTTISLGGGTYTGVTFPVILREYPTYTLVPMTNDSFISWNGPFVAIEDVL
Ga0247723_100036244F078706AGGAMSKLGSALGKKYEENRLSVLTRSFELGDHTFKVRVPSVSEIEAIYNYFKNPNEEKVEIEYQKMLKEFDGLKEKEGVEIKDNDMVIDGRSMRETAKNKHILQHRIVEYIKFLIPETGSLEDITYEDVEAEFPLSVQMTLVEKINEVISPDYKDIKSK
Ga0247723_100036245F086839AGGCGGMSVKFAVNGLKETLDAFKEFQEQFGDKDAKSKVLIPAVREAMKPVLAMAKALSPKDTGALDRSLYITARRPTRKDMKSRYVTPKDSVISLVSSRPIPKKLKQQFHAQYGDLKGKEYKKAKKKFYTEAGVMFDARAIANEFGTANMSAKPFMRVSLESQAQAVATKLGLIIKQKMDSYKAKNLTT
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