NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000731

Scaffold Ga0247723_1000731


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000731 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21249
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (19.05%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020651Metagenome / Metatranscriptome222Y
F025278Metagenome / Metatranscriptome202N
F025648Metagenome / Metatranscriptome200N
F032560Metagenome / Metatranscriptome179Y
F054853Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100073114F025648GGALPIGLIEQADLPIIEAFKGDKLNLISPVTLRENLAYIFTLIGLTRLPDVVELEVIEDYIRTTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKAKANQVRKNLPPPPEEPVKQLTDEEIVEFTKNEWLTGKREDFNRVFNADKVFMILLKQGKLKFTQEQILETIKVVREDNLYRLNRMHPLEAKEFTKQIKKEDFIESQCKKLALVKYFENISS
Ga0247723_100073118F032560N/AMQETYQDLENGLQNLLPMERQMLLAKIYHYAWYNHEAYAQLLTFIDHWEKHSEFKAVFFNQGSEESTNQI
Ga0247723_100073122F054853N/AMSEEKEPEITEEIEWEDAETTTRSDLISCAYYAISAVEDIDLTLISKIEANKIRRIKRQSLDIIAEVIGEMHAEIFDTGEDI
Ga0247723_100073131F025278GGAMTIFLTIVFLVHLISWVLYQKHQFNERDLYASKPQEAYEQNKKWHFWKGINHLSVYVLVWSLYGFWSMFLFATAFWFGFDILCNVIVLKRPAFYVGVTADTDKFIRKVAEFIKIKPEYTSALIKVLILIILLILK
Ga0247723_10007317F020651AGGMNIAVILLTLNRNDLTKRVIDQNFHNSGYDADCFLVDNGSDQIPYELYNWTNCNVASKRGIGAGVNAGLRMTRGYDGVCILANDILLPEGWLSKWVIFSQRVSKTGIIGIHCVEDLPPLVDGVHKIHTPFGNNFLTRELIDTIGGYNIEYDPYGMQDRDYAERATIAGFTNYYLPDLRSEHIGHDVGNGTEYRAMKDASLQRAQAVWEKYQPIYHTEKKLRCEF
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