NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000781

Scaffold Ga0247723_1000781


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000781 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20325
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009735Metagenome / Metatranscriptome313Y
F016782Metagenome / Metatranscriptome244Y
F017814Metagenome / Metatranscriptome238Y
F086809Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10007811F017814AGGAMSQQSNFDFNAFNALTERKPAGLQIFLAQQLLSNALWSMEKYDNPRQTEVRDALNALKTLRTQLKADALARA
Ga0247723_100078116F009735N/AMTMMTGIVEAISTKDVNTKFGSKPTYSLKVNGTWVKCGFKNPNAGAGDEVEFDGNTGTYGLETKAVNVLRKGAGTPPPPATSNTAVAVTRTTGSGYAAKVFPIPPLHGDRAIVRQNALARATDIYIAARGGKPFELEGSNLDFVISLARKFEAYTAGDLDLAEAEAESAIE
Ga0247723_10007816F086809AGGAGMNLDKQLDLVDEMQWEDSGKVEMISLEDAGLEEELLIEEVEAVSETVFRNGIYAYLDWFYDGSIENDDY
Ga0247723_10007819F016782GGAGVETTSSPLYAAATESLVSDASATSTFEKMIQVAYTHSTVDTFTKELKDTEKLIKKDFEISSMPGPWRSAKSVIHTAMKLGISLVDDNGSYCGKTFLQNKIKEMKPGKEEVTNQQYIDKVLRLLMDIPEHLDAKTIHMEVKKMVFS
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