NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000855

Scaffold Ga0247723_1000855


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000855 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19156
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (61.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006846Metagenome / Metatranscriptome363Y
F008814Metagenome / Metatranscriptome327Y
F021988Metagenome / Metatranscriptome216Y
F105192Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100085520F021988GAGMSDSFKKEDGTGMVPPANAGAPAGAVTSTNTPKKYPRQGVKIDTNKHGIRRETSLVPRPPKKSGRKKV
Ga0247723_100085529F008814N/AMDNKLTVLEEIIKEIGEELYQKWYNALAIEDRTEESSKAMSSNAGETAVWVIQTFMNKFNKAADELKGE
Ga0247723_100085534F105192N/AMNIPLTEIIITLFAAAISGLLTAQIGARRSKKEKIERLAEKAHDQLLLELKDLEIKLYKLEKDLNEWKDKYFEALQELIRVKAELEGTMLKLSHIGMHSNED
Ga0247723_10008555F006846AGGAMKMLIEFVERYLMRPKRLREAIEAVVHENDELLRILEQHEEEGPTNLTWSEGDTWYGWTYSPAKNRYYFDDIGNKSLMGLWEEQWLREEATD
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