NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000911

Scaffold Ga0247723_1000911


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000911 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18485
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (88.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015965Metagenome250Y
F024254Metagenome206Y
F037702Metagenome167Y
F071957Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10009111F024254N/AMIEFIEIFNYVAKVARPAHVKVAIADSMADTFQEIGLDSLDGLVMLMYFDDLYGIDDAVSKEWAPTSVQELHDLVMANKTKEPVSMEEIVEACK
Ga0247723_100091111F037702GGAMLSEETIKQIFFYCDLHEPNAVVADDVDIVQFAHKIAAYVEPIIAAKEHQRCVKIVSHMNPEVSRSLENQRPK
Ga0247723_100091122F071957AGGAGMKKQDAELSPLARQLLGNSGAMKLFTQTEFDEALREAKAEIMAIAIQTSKQAIAIERNACADLALQWSQEELSEAIRHRMRPVND
Ga0247723_10009113F015965AGGMLTDSKKKELSVEAVLMIAAQQTKSKYSAEQVYAALVKEMNMEGTSTYREGNTVFLMHHAKGRIGTFRALNADTARNYLDNSYTFIKDAYDMGFDILVSDFQDPTIMNLFKGISRNPPREGMGYRAERTKDGFRVTVKLGPTRPDRE
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