NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001222

Scaffold Ga0247723_1001222


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001222 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15451
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (76.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009526Metagenome / Metatranscriptome316N
F009679Metagenome / Metatranscriptome314Y
F026507Metagenome197N
F031795Metagenome181N
F038217Metagenome166Y
F040539Metagenome161Y
F040620Metagenome161N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10012221F038217AGGMTQKNPELPEDKPMGIYLSLNSAISVANWLAPTDVAALTLARRIATALDTAFDMGDLKEATPLAAKYLNVLQQLHLTVETRTAGKQGEENDGTNHVGNYLRLLETKDRKQKPEPAKRRASGSATS
Ga0247723_100122211F031795N/AVTVYTPYPKVIFAGVNEYADNTISNISISLGRRDIYEQALVGIASVRLWTDADTALNVNLSDSIQIQIKDSTNTYRTIYTGTISDLDISLDAYGSEGSVAIYSITAVGPLAILNRFTTGSLGFSKEFDGTRVLNILSDAFLESWDEVVPTLTWSAVSSLATWDNWGGANQTLVDNLIADIDTPGTYELTAYSDGVTNALSLAQQAAQSGRGFLYEAPDGSIHYDSYTSRASLTPLTLTDDDLLAVGLRQAAQWSEIVNDVTLTYKNNQEKYAEDYTSQQSFGVLSGNRSTQLENGSDAQSQADAFLESRAFPRTYPEELTIPLHSPTVSDATRDALILMHVGSAIYTQDLPAVFGGTFDGFVEGIKWNLDRYTASMTLICSAISETYPHAIWLQIAPTVTWAGYTPTTTEWQDL
Ga0247723_100122218F040539AGGAGMKWLKKYVSAITADTYTYVGLLIAYFTLDGSAKKVTGLLIIVGVVVYLVSLPLRDDDTPD
Ga0247723_100122222F026507GGAMICEHGADAPKYCAICRHQGIMGKAEGITIAKESKLNWHDEAVICIRQMARTGKPFTAEDVVAEIGAPTGSGKVIGAAFNTVARSGMIWRCGERPADRKSSHRRMLAVWRGGQVQEQVRLFDE
Ga0247723_100122225F040620N/AMTRWVQVKHDELLEYVAMVEYLRKDHTALQEQIKDAKELASIIEATYKERLDKLTDYILDIHPANYKYERGLMDAYNIVAGHEQKL
Ga0247723_10012225F009679AGGAMALITISELKAVLGIGDIYADAIVQEVADAAENILLSYLIFDDVAIKGVSLTNNVARFYCYDNTFVVGQALTVSKCGAPFDGSRTVTKVGYDEYGVTFFEAAITNADITKRSIIPNGRALLTSQATMYDTGYPEVSEACLAIACDIWITRTGTLGQQGVDFQSPAPYRLGRSMLTRVSGLLGKHLDTRGYLG
Ga0247723_10012227F009526GAGGMTAVYITGRALTLTINSVSYADQASTVTLEMENNQQVLEVLSGRAYKTVDKTATLNVEMYLDDTSSAGIISALWDAAKNAPDTSLAFSFDVNGDTFTGNLFPVFPTVGGAATDVLTTSLSFVVEDGAVTRT
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